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Error Unable To Open Primary Document Entity

I suffered the same problem, so I debugged the code and found out that Xerces is trying to open the file in mode FILE_SHARE_READ only. mzML files of this size are best processed on 64bit machines with lots of RAM. MoreWhitePapers Best Answer 0 Mark this reply as the best answer?(Choose carefully, this can't be changed) Yes | No Saving... Your Answer draft saved draft discarded Sign up or log in Sign up using Google Sign up using Facebook Sign up using Email and Password Post as a guest Name http://tubee.net/error-unable/error-unable-to-download-the-primary-update-catalog-file.html

Please refer to our Privacy Policy or Contact Us for more details You seem to have CSS turned off. Thanks , Tool_Focs Join this group Popular White Paper On This Topic Human Capital Management Comparison Guide 6Replies Best Answer 0 Mark this reply as the best answer?(Choose carefully, this can't Type:RuntimeException, Message:The primary document entity could not be opened. If it throws error, then it will not be opened through ParseXMLFromURL function.

I think some of you will find this information useful: http://www.codesynthesis.com/~boris/blog/2007/09/02/xerces-2-8-0-released/Boris -- Boris Kolpackov Code Synthesis Tools CC http://www.codesynthesis.comOpen-Source, Cross-Platform C++ XML Data Binding --------------------------------------------------------------------- To unsubscribe, e-mail: [hidden email] For What warning labels could you see on products to be used in space? Thanks -Sreeni. Can three +1/+1 counters be considered one +3/+3 counter?

Thanks in Advance. Toolbox.com is not affiliated with or endorsed by any company listed at this site. Please don't fill out this field. This is probably one of the included libraries (xerces?) ...

The Anti-Santa: Dealing with the Naughty List Error Logging Utility and Controllers Add warning to edit slug/permalink button on editor screen. It could be trying to open a XSD file that doesn't actually exist (maybe take a look at issues.apache.org/jira/browse/XERCESC-544) –Joe Bane Nov 3 '12 at 1:15 add a comment| 1 Answer I also got > the following warning before all the errors: > > warning: unable to open primary document entity 'xml1.xsd' > > Do you get the warning as well? https://sourceforge.net/p/open-ms/mailman/message/28638677/ If you do, then the problem is that > the parser cannot find the schema to validate the XML document.

asked 1 year ago viewed 160 times Blog Stack Overflow Gives Back 2016 Developers, Webmasters, and Ninjas: What’s in a Job Title? That is, sharing for readers, but in exclusive mode with respect to writers. The indicates the .xsd file that the stage is trying to open, and generally this means the schemaLocation attribute is incorrectly set, or the file cannot be opened. If I move > this file somewhere else, I get the same errors you do.

You can try to set a breakpoint in the error handler and see what's going on up the stack. In a multi-node setup across multiple machines, the file must be accessible at the given path from each machine. Also if you can create a small test case that reproduces this problem then I can take a look. In the meantime it might work to delimit them with semi-colons like this file1path ; file2path Thanks Ken Comment Add comment · Share 10 |1200 characters needed characters left characters exceeded

It can either be the main document or something that it references, e.g., a schema or DTD file. > Is there some form of verbose debugging I can turn on to check my blog Not able to access Internet after running sudo chown -R $USER$USER /usr/lib/ The college in 'Electoral College' Did Donald Trump say that "global warming was a hoax invented by the Chinese"? You cannot delete your posts. Not the answer you're looking for?

quantification datatype\n\n[T"..., 8191) = 8191 read(3, "transition validation attribute\n"..., 8191) = 5802 read(3, "", 8191) = 0 brk(0x93b8000) = 0x93b8000 close(3) = 0 stat64("../usb-drive-contents/ControlPooled_200ng.wiff.MZML", {st_mode=S_IFREG|0444, st_size=3568219846, ...}) = 0 open("../usb-drive-contents/ControlPooled_200ng.wiff.MZML", O_RDONLY|O_LARGEFILE) Terms Privacy Opt Out Choices Advertise Get latest updates about Open Source Projects, Conferences and News. xml xsd xerces share|improve this question asked Oct 23 '12 at 17:58 Kelly Beard 305212 Could you post an example of a XML file you're trying to parse? this content Cobbs Thread view [Open-ms-general] Error: unable to open primary document entity From: Archie Cobbs - 2012-01-06 19:50:34 Attachments: Message as HTML I'm attemping to run NoiseFilterGaussian on a 3.5 Gig

You cannot reply to posts. Reason: Xalan fatal error (publicId: , systemId: , line: 0, column: 0): An exception occurred! I understand that I can withdraw my consent at any time.

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Posted on: 2013/11/22 5:29 Markus Re: XML Parser Error: unable to open primary document entity #4 Webmaster Joined:2006/3/27 10:59Last Login:2016/12/16 10:31 From SenseGraphics Group: Registered Users Webmasters Posts: 2440 Level : Is there anyway to record those features. Itay 0 Replies Your answer Hint: You can notify a user about this post by typing @username Attachments: Up to 3 attachments (including images) can be used with a maximum of Please don't fill out this field.

An Array of Challenges #2: Separate a Nested Array Theorems demoted back to conjectures The college in 'Electoral College' Replace elements in list larger than x times the magnitude of the Register now! Itay takashi · Jul 03, 2013 at 01:59 AM 0 Share Hi Itay, Thank you for the response. have a peek at these guys You cannot post without approval.

The FeatureTypeFilter can be used after reading. You cannot attach files to posts. libcanberra-tk cannot open shared object file2“Unable to connect to X server” after TTY login1Unable to add PPA repository from terminal0Trying to install Ubuntu on MacBook Pro 5,3 - getting i8042 error0Multiple Takashi etls_itay · Jul 03, 2013 at 11:50 AM 0 Share Hi Takashi, Good to know that there is a workaround in case of need, but I suppose the neatest option

Posted on: 2013/11/21 8:02 StevenC Re: XML Parser Error: unable to open primary document entity #3 Joined:2013/9/9 19:22Last Login:2014/4/18 20:57 Group: Registered Users Posts: 108 Level : 9HP : 0 / I want to convert it to XMLDOC object so that it can be parsed. Browse other questions tagged xml xsd xerces or ask your own question. Running OpenMS on large files using a 32-bit machine doesn't seem to work.

When specify the file path as the XML reader parameter, there are no problem. If there is no way to use multiple xfMap files anyway, I would look for other approaches. Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] More information about the xsd-users mailing list current community chat Stack Overflow Meta Stack Overflow your The error text reads "Fatal Error: Message: unable to open primary document entity" and lists the file name of the file we are trying to open.

Regards, Itay takashi · Jul 03, 2013 at 11:58 AM 0 Share Hi Itay, I've sent a request to the Safe support a minute ago. Maybe there is a > 32-bit file length value overflow somewhere? > This does appear to be the problem. The programs I've run so far are all affected. Id= Information Server v8 uses advanced versions of the XML Parser and Transformer which require a schema file to be correctly set in the schemaLocation attribute of the .xml file.

Open the XML file in the Internet Explorer. Have you tried testing the XML file with xmllint? –DopeGhoti Nov 12 '15 at 20:08 sorry,no i don't know how to try xmllint –Error3735 Nov 12 '15 at 20:12 What you can do is provide your own entity resolver which handler file opening. On this page it says the -D_FILE_OFFSET_BITS=64 flag and the off_t typedef should be used in all C/C++ compilations to support large files.

It works fine > if I keep xml1.xsd in the same directory as xml1.xml. Puzzled! Kindly help me in understanding this error.